SNP Profiles of IMC 14   View Data

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 1234567891011121314
_Input profile
CCAGCGTTTTCCTTCCCCAAGGCTAATT
1._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
2._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
3._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
4._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
5._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
6._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
7._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
8._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
9._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
10._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
11._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
12._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
13._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
14._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
15._IMC_14
CCAGCGTTTTCCTTCCCCAAGGCTAATT
16._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
17._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
18._GC-03-030-3-09
CCAGCGTTTTCCTTCCCCAAGGCTAATT
19._GC-04-054-3-18
CCAGCGTTTTCCTTCCCCAAGGCTAATT
20._IMC_14
CCAGCGTTTT_TTCCCCAAGGCTAATT
21._GC-03-030-3-09
CCAGCGTTTT_TTCCCCAAGGCTAATT
22._GC-03-030-3-09
CCAGCGTTTT_TTCCCCAAGGCTAATT
23._IMC_14
CCAGCGTTTT_TTCCCCAAGGCTAATT
24._GC-03-030-3-09
CCAGCGTTTT_TTCCCCAAGGCTAA_
25._IMC_14
CCAGCGTTTT_TTCCCCAAGGCTAA_
26._RUQ_1634
__CG_____CC_GG_AA_
27._IMC_14
CCAGCGTTTTCCTTCC_AAGGCTAATT
28._RUQ_1634
_AGCGTT_______CTAA_
29._RUQ_1634
CTAG_CTTTAACCCTCTAAAACTAGCT
30._GC-03-30-3-9
GGAGCGAAAACCAA__AAGGAGAAAA
31._RUQ_1634
GGAGCGAAAACCAA__AAGGAGAAAA
 1516171819202122232425262728
_Input profile
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
1._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
2._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
3._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
4._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
5._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
6._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
7._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
8._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
9._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
10._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
11._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
12._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
13._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
14._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
15._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
16._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
17._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
18._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
19._GC-04-054-3-18
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
20._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
21._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
22._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
23._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
24._GC-03-030-3-09
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
25._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
26._RUQ_1634
____CCGG_AAGG__CC__
27._IMC_14
AAGGCCCCCCGGCCAAGGGGCTCCAAGG
28._RUQ_1634
___CCCCGGCCAAGGGGCTCCAA_
29._RUQ_1634
AAGGTTCCGGGGCTCCCCTTCTCCAGGG
30._GC-03-30-3-9
AAGGGGGGGGCCGGAAGGCC_CC_GG
31._RUQ_1634
AAGGGGGGGGCCGGAAGGCC_CC_GG
 29303132333435363738    
_Input profile
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
1._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
2._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
3._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
4._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
5._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
6._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
7._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
8._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
9._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
10._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
11._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
12._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
13._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
14._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
15._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
16._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
17._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
18._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
19._GC-04-054-3-18
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
20._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
21._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
22._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
23._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
24._GC-03-030-3-09
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
25._IMC_14
AATTAGCGAACTGTACTTGGX_XX_XX_XX_X
26._RUQ_1634
__AG____AC__X_XX_XX_XX_X
27._IMC_14
AATTAG_ACCTGTACTTGGX_XX_XX_XX_X
28._RUQ_1634
AATTAGCGACCTGTAC__X_XX_XX_XX_X
29._RUQ_1634
AACTAACCACCTGTCCTTGGX_XX_XX_XX_X
30._GC-03-30-3-9
AAAAAGCGACAGACACTTGGX_XX_XX_XX_X
31._RUQ_1634
AAAAAGCGACAGACACTTGGX_XX_XX_XX_X

Input profile: IMC_14

 
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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

1._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

9._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

10._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

11._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

12._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

13._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

14._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

15._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

16._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._IMC_14 GC-04-054-3-18

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

20._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

21._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

24._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14 RUQ_1634

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._IMC_14

98.6 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

28._IMC_14 RUQ_1634

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._IMC_14 RUQ_1634

60.8 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

54.4 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

54.4 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25